Pyxis Oncology Inc.

11/05/2026 | Press release | Distributed by Public on 11/05/2026 06:46

Quarterly Report for Quarter Ending September 30, 2026 (Form 10-Q)

Management's Discussion and Analysis of Financial Condition and Results of Operations.

You should read the following discussion and analysis of our financial condition and results of operations together with our (1) unaudited condensed consolidated financial statements and related notes thereto included elsewhere in this Quarterly Report on Form 10-Q, and (2) consolidated financial statements and related notes and management's discussion and analysis of financial condition and results of operations for the fiscal year ended December 31, 2025, included in our Fiscal 2025 10-K. Unless the context requires otherwise, references in this Quarterly Report on Form 10-Q to "Pyxis Oncology," the "Company," "we," "us," and "our" refer to Pyxis Oncology, Inc. and its subsidiaries.

Forward-Looking Statements

This Quarterly Report on Form 10-Q contains "forward-looking statements" within the meaning of Section 27A of the Securities Act of 1933, as amended, or the Securities Act, and Section 21E of the Securities Exchange Act of 1934, as amended. These statements are often identified by the use of words such as "anticipate," "believe," "can," "continue," "could," "estimate," "expect," "intend," "likely," "may," "might," "objective," "ongoing," "plan," "potential," "predict," "project," "should," "to be," "will," "would," or the negative or plural of these words, or similar expressions or variations, although not all forward-looking statements contain these words. We cannot assure you that the events and circumstances reflected in the forward-looking statements will be achieved or occur and actual results could differ materially from those expressed or implied by these forward-looking statements.

Factors that could cause or contribute to such differences include, but are not limited to, those identified herein, and those discussed in the section titled "Risk Factors" set forth in Part II, Item 1A. of this Quarterly Report on Form 10-Q and in our other filings with the SEC. These risks are not exhaustive. New risk factors emerge from time to time and it is not possible for our management to predict all risk factors, nor can we assess the impact of all factors on our business or the extent to which any factor, or combination of factors, may cause actual results to differ materially from those contained in any forward-looking statements. In addition, statements that "we believe" and similar statements reflect our beliefs and opinions on the relevant subject. These statements are based upon information available to us as of the date of this Quarterly Report on Form 10-Q, and while we believe such information forms a reasonable basis for such statements, such information may be limited or incomplete, and our statements should not be read to indicate that we have conducted an exhaustive inquiry into, or review of, all potentially available relevant information. These statements are inherently uncertain and investors are cautioned not to unduly rely upon these statements. Except as required by law, we undertake no obligation to update any forward-looking statements to reflect events or circumstances after the date of such statements.

Overview

Pyxis Oncology is a clinical-stage oncology company advancing a development strategy focused on addressing unmet medical needs in patients with solid tumors with an immediate focus on head and neck squamous cell carcinoma (HNSCC).

Our lead product candidate, micvotabart pelidotin (MICVO, formerly PYX-201), is an investigational novel antibody-drug conjugate (ADC) that uniquely targets the splice variant of fibronectin, extradomain-B of fibronectin (EDB+FN), a non-cellular structural component of the extracellular matrix (ECM) in the tumor microenvironment (TME). EDB+FN is an isoform of fibronectin present in tumors that is negligibly expressed in normal adult tissues and facilitates cancer progression by playing multiple roles including promoting cell proliferation, adhesion, and migration, activating the integrin signaling pathway, stimulating angiogenesis and vascular remodeling, driving epithelial-mesenchymal transition (EMT), and establishing the pre-metastatic niche. We believe EDB+FN is a compelling target for cancer therapeutics as the physiological expression of EDB+FN is very low in healthy adult tissues, yet it is found to be highly expressed in a variety of solid tumors.

Our ADC, MICVO, consists of a fully human IgG1 monoclonal antibody that is site-specifically conjugated to a cleavable linker with an optimized auristatin (Aur0101) microtubule inhibitor payload. Unlike conventional ADCs which bind to an antigen on the surface of a cancer cell, MICVO is designed to bind to EDB+FN in the tumor ECM, where extracellular proteases under acidic conditions cleave the linker to release the Aur0101 payload. The payload diffuses through the membrane of cancer cells to kill them directly, which is the first component of MICVO's three-pronged mechanism of action (MOA). The dying cancer cells release the payload which diffuses into nearby cancer cells and kills them via the bystander effect, representing the second component of MICVO's MOA. The dying cancer cells also release neoantigens which trigger immunogenic cell death (ICD), the final component of its MOA. Together with its purpose-built design and postulated three-pronged MOA, MICVO has the potential for improved stability and anti-tumor activity compared to conventional ADCs.

MICVO is currently being studied as monotherapy in recurrent and metastatic head and neck squamous cell carcinoma (R/M HNSCC) and in combination with KEYTRUDA® (pembrolizumab) in first-line/second-line and beyond (1L/2L+) R/M HNSCC and other solid tumors. In September 2026, we reported positive updated data from our Phase 1 monotherapy study in second-line and beyond (2L+) R/M HNSCC, which we believe support the advancement of MICVO into a pivotal program, and we plan to initiate HeadlinerSM, our global pivotal Phase 3 monotherapy trial in 2L+ R/M HNSCC, in mid-2027.

MICVO Monotherapy

PYX-201-101 Phase 1 (Part 1) Monotherapy Dose Escalation Study

Our ongoing global Phase 1 monotherapy study, referred to as PYX-201-101, is a multi-part study. Part 1 was a dose escalation study evaluating MICVO monotherapy in patients with advanced solid tumors known to express EDB+FN, and Part 2 is a dose expansion study which includes 2L+ R/M HNSCC. In November 2024, we reported positive preliminary results from the Part 1 dose escalation study, which included a total of 80 patients dosed across nine solid tumor types at doses ranging from 0.3 mg/kg to 8 mg/kg, with a data cut-off of October 4, 2024. Of the nine solid tumor types included in the study, the strongest tumor regression response was observed in R/M HNSCC. Among the six efficacy evaluable heavily pre-treated patients with R/M HNSCC, the confirmed objective response rate (ORR) was 50% per RECIST v1.1 at the therapeutically active dose response range of 3.6 mg/kg - 5.4 mg/kg administered intravenously every three weeks (IV Q3W), including one confirmed complete response (CR) and two confirmed partial responses (PRs), with a disease control rate (DCR) of 100%. Based on these observations, 5.4 mg/kg IV Q3W was selected for dose expansion as the dose presenting the optimal benefit-risk profile within the efficacious dose range, and subsequent translational data showing a reduction in circulating tumor DNA (ctDNA) tumor fraction (TF) after treatment with MICVO, particularly at the 5.4 mg/kg dose, further supported this dose selection.

PYX-201-101 Phase 1 (Part 2) Monotherapy Dose Expansion in 2L+ R/M HNSCC

In January 2025, we initiated the dose expansion portion (Part 2) of the Phase 1 PYX-201-101 monotherapy study to further evaluate MICVO as a monotherapy at a dose of 5.4 mg/kg IV Q3W and to assess preliminary efficacy in R/M HNSCC. The Part 2 dose-expansion phase includes the following two cohorts:

•
Arm 1: MICVO monotherapy for second line (2L) and third line (3L) R/M HNSCC patients who have received prior platinum-based chemotherapy and prior PD-(L)1 inhibitor therapy; and
•
Arm 2: MICVO monotherapy for 2L and 3L R/M HNSCC patients who have received prior epidermal growth factor receptor (EGFR) directed therapy and prior PD-(L)1 inhibitor therapy.

In December 2025, we reported positive preliminary data, based on a November 3, 2025 data cut-off, for the 18 R/M HNSCC patients treated at 5.4 mg/kg based on total body weight (TBW) in Part 1 and Part 2, of whom 13 were efficacy evaluable. Among the 13 efficacy evaluable patients, the confirmed ORR was 46% (6/13) per RECIST v1.1, including one confirmed CR, and the DCR was 92% (12/13); confirmed responses were observed in both dose expansion cohorts and regardless of human papillomavirus (HPV) status. MICVO was generally well tolerated, with Grade ≥3 treatment-related adverse events (TRAEs) reported in 56% (10/18) of patients, TRAEs leading to treatment discontinuation in 28% (5/18) of patients, and no Grade 4 ADC payload TRAEs of interest or Grade 5 events. All five patients who discontinued treatment due to TRAEs had high body weight (defined as at least 10% above adjusted ideal body weight, or AIBW), consistent with the association of patient body weight, systemic drug exposure and tolerability that has been observed with several approved ADCs and addressed through modified weight-based dosing such as dose capping or AIBW dosing. In December 2025, we implemented a dose cap.

Updated Phase 1 Monotherapy Data in 2L+ R/M HNSCC (September 2026)

In September 2026, we reported positive updated data from PYX-201-101, based on an August 18, 2026 data cut-off, for the 35 patients with 2L+ R/M HNSCC who had been treated at 5.4 mg/kg IV Q3W with a dose equivalent to or below the dose cap (the dose cap population), of whom 33 were efficacy evaluable. The dose cap population included heavily pre-treated patients from both dose expansion cohorts: patients had received a median of three prior lines of systemic therapy (range one to five), including a median of two prior lines in the recurrent or metastatic setting; all patients had received prior platinum-based therapy and prior anti-PD-(L)1 therapy; 71% had received a prior taxane; and 57% had received a prior EGFR inhibitor, including five patients previously treated with the novel EGFR-targeting agents petosemtamab or ficerafusp alfa. Approximately half of the patients (51%) had HPV-positive oropharyngeal squamous cell carcinoma and the remainder (49%) had HPV-unrelated disease. Patient demographics and the prior treatment characteristics of treated patients are illustrated in Table 1 below.

Demographics

Efficacy Data

Among the 33 efficacy evaluable patients, the confirmed ORR per RECIST v1.1 was 36% (12/33) and the DCR was 94% (31/33). Responses were rapid and deep: 75% of responders achieved a response by the first scan at six weeks, and 83% of responders achieved a greater than 50% reduction in tumor burden from baseline. Median progression-free survival (PFS) was 6.2 months (95% confidence interval (CI): 4.8 to 8.8 months), the 12-month overall survival (OS) probability was 79% (95% CI: 58.1% to 90.3%), and median OS had not been reached as of the data cut-off. A summary of the efficacy data is provided in Table 2 below.

Clinical activity was observed across key patient subgroups, with a confirmed ORR of 35% in patients with HPV-positive oropharyngeal disease (n=17) and 38% in patients with HPV-unrelated disease (n=16); 28% in patients who had received a prior EGFR inhibitor (n=18), including 40% in the subset previously treated with a novel EGFR-targeting agent (n=5), and 47% in patients who had not received a prior EGFR inhibitor (n=15); and 35% in patients who had received a prior taxane (n=23) and 40% in those who had not (n=10). Efficacy data by patient subgroup are provided in Table 3 below.

Safety Data

No new safety signals were observed, and the tolerability profile was consistent with that of other ADCs with auristatin payloads and was generally manageable. The median duration of treatment was 120 days (range 21 to 470 days). TRAEs of any grade were reported in 91% (32/35) of patients, Grade ≥3 TRAEs in 54% (19/35), non-hematologic CTCAE Grade ≥3 TRAEs in 43% (15/35) and serious TRAEs in 14% (5/35). TRAEs led to dose reduction in 40% (14/35) of patients and to treatment discontinuation in 14% (5/35) of patients (three due to peripheral neuropathy, one due to an ocular event and one due to muscle weakness), with discontinuations occurring at a median of 162 days after the start of treatment (min - max, 104-212). There were no treatment-related deaths. ADC payload TRAEs of interest were predominantly Grade 1/2 and Grade 3 events, respectively: cutaneous 49% (17/35) and 6% (2/35), peripheral neuropathy 40% (14/35) and 17% (6/35), ocular events in 29% (10/35) and 6% (2/35) and pneumonitis in 11% (4/35) and 0%. Adverse events of interest, including peripheral neuropathy, generally occurred after patients had experienced evidence of benefit and after prolonged duration of treatment, with a median time to onset of 82 days (range 3 to 157) for Grade 1 or 2 peripheral neuropathy and 166 days (range 85 to 197) for Grade 3 peripheral neuropathy. The data indicated that dose capping reduced the frequency and severity of adverse events in high body weight patients, which we believe validates our dose capping strategy of maintaining clinical activity while mitigating the risk of safety events. Table 4 below summarizes key TRAEs observed as of the August 18, 2026 data cut-off date.

MICVO Combination Therapy

In November 2024, we announced a Clinical Trial Collaboration and Supply Agreement with Merck & Co., Inc. or Merck (known as MSD outside of the United States and Canada), for a Pyxis Oncology-sponsored study of MICVO in combination with Merck's anti-PD-1 therapy, KEYTRUDA® (pembrolizumab). In January 2025, we initiated the Phase 1/2 combination study with KEYTRUDA® (pembrolizumab), PYX-201-102, and are actively enrolling and dosing patients in this study. PYX-201-102 is a Phase 1/2 open-label, global, multicenter dose escalation and dose expansion study designed to evaluate the safety, tolerability, pharmacokinetics (PK), pharmacodynamics (PD) and preliminary efficacy of MICVO in combination with pembrolizumab in patients with advanced solid tumors. Patients with histologically or cytologically confirmed advanced solid tumors, including 1L R/M HNSCC, 2L+ R/M HNSCC, cervical cancer, gastric cancer, HR+/HER2- breast cancer, and locally advanced or metastatic triple-negative breast cancer (TNBC), are eligible to enroll.

PYX-201-102 Phase 1/2 Preliminary Combination Data in R/M HNSCC

In December 2025, we reported positive preliminary data from this study, evaluating MICVO at 3.6 mg/kg and 4.4 mg/kg IV Q3W, each administered in combination with a fixed 200 mg dose of pembrolizumab Q3W, in patients with 1L/2L+ R/M HNSCC. As of the data cut-off date of November 3, 2025, seven patients had been treated, including four patients at 3.6 mg/kg and three patients at 4.4 mg/kg of MICVO, each in combination with pembrolizumab. All treated patients had received prior systemic therapy, including four patients with 1L R/M HNSCC (median of one prior systemic therapy administered in the neoadjuvant or adjuvant setting) and three patients with 2L+ R/M HNSCC (median of three prior lines of therapy, some of which were administered prior to the R/M setting). Among the seven efficacy-evaluable patients, the confirmed ORR was 71% (5/7, one patient confirmed response after November 3, 2025 data cut-off) and the DCR was 100% (7/7), with all seven patients demonstrating meaningful tumor regression. Responses were observed across a range of PD-L1 combined positive scores (CPS), from CPS≥1 to CPS>20, and included responses in patients who had previously received checkpoint inhibitor treatment and had experienced disease progression while receiving checkpoint inhibitor treatment. Preliminary safety data indicated that MICVO in combination with pembrolizumab was generally well tolerated, with no Grade 3 or Grade 4 ADC payload TRAEs of interest and no Grade 5 events reported. TRAEs were reported in 86% (6/7) of patients. No TRAEs led to treatment discontinuation, and, as of the data cut-off date, no overlapping toxicities between MICVO and pembrolizumab (KEYTRUDA®) had been observed.

Our Clinical Pipeline

The following table summarizes our clinical pipeline

MICVO Monotherapy Next Stage of Development

In September 2026, we reported updated clinical data from both cohorts for patients treated with MICVO at 5.4 mg/kg IV Q3W with a dose equivalent to or below a dose cap (see "Updated Phase 1 Monotherapy Data in 2L+ R/M HNSCC (September 2026)" above). We expect to report updated OS data from this study in the first half of 2027.

In November 2026, data from our Phase 1 monotherapy study in previously treated R/M HNSCC are expected to be presented in a late-breaking oral presentation at the 38th EORTC-NCI-AACR Symposium on Molecular Targets and Cancer Therapeutics, where we also expect to present preclinical findings in two poster presentations further characterizing MICVO's extracellular mechanism of action and evaluating MICVO in combination with EGFR-targeted therapy.

Dose capping and AIBW are both well-established approaches to modified weight-based dosing and have demonstrated improved tolerability without sacrificing clinical activity in studies of other ADCs. In December 2025, we implemented a dose cap for higher body weight patients. Based on internal PK simulation modeling indicating that MICVO exposure with dose capping and AIBW dosing are comparable, dose capping was prioritized for its operational simplicity and ease of implementation. A protocol amendment permitting AIBW dosing has since been approved, and AIBW dosing has begun in ongoing clinical studies. AIBW will be selected as a go-forward dose strategy only if it offers a superior profile to dose capping.

We have aligned with feedback from the U.S. Food and Drug Administration (FDA) and the European Medicines Agency (EMA) on the design of HeadlinerSM, our planned global pivotal Phase 3 monotherapy trial of MICVO in patients with 2L+ R/M HNSCC whose disease has progressed following treatment with both platinum-based chemotherapy and an anti-PD-1 therapy. The randomized, open-label, two-arm trial is expected to enroll approximately 500 patients, randomized 1:1 to MICVO or investigator's choice of cetuximab, docetaxel or methotrexate, with co-primary endpoints of overall response rate and overall survival. We are advancing the clinical development of MICVO through Project Optimus, the FDA's initiative focused on dose optimization and dose selection in oncology drug development, and in February 2025 the FDA granted Fast Track Designation for MICVO for the treatment of adult patients with R/M HNSCC whose disease has progressed following treatment with platinum-based chemotherapy and an anti-PD-(L)1 therapy. We expect to receive FDA feedback on dose selection from our End-of-Phase 2 meeting in the first quarter of 2027, and plan to initiate our global pivotal Phase 3 trial, HeadlinerSM, in mid-2027 following alignment with the FDA on dose selection.

MICVO Combination Therapy Pipeline

Our Phase 1/2 combination study with KEYTRUDA® (pembrolizumab) (PYX-201-102) is ongoing and we are conducting the dose escalation phase of PYX-201-102 across multiple tumor types with the objective of identifying the Recommended Phase 2 Dose (RP2D) of MICVO in combination with pembrolizumab. We are currently enrolling and dosing patients across several dose levels between 3.6 mg/kg and 5.4 mg/kg of MICVO, in combination with pembrolizumab at the fixed dose of 200 mg IV Q3W, in order to accurately characterize the RP2D for MICVO in combination with pembrolizumab, subject to ongoing safety review, enrollment progress, and clinical data evaluation.

We plan to provide a corporate update in December 2026 that we expect will outline a comprehensive development strategy for MICVO in R/M HNSCC, including how emerging combination data inform potential opportunities across treatment settings, and will include updated efficacy and safety data from the ongoing PYX-201-102 Phase 1/2 dose escalation study evaluating MICVO in combination with KEYTRUDA® (pembrolizumab) across multiple doses in 1L R/M HNSCC. The update is expected to include data from a total of at least 20 patients with 1L R/M HNSCC treated with MICVO at the 3.6 mg/kg and 4.4 mg/kg dose levels in combination with a fixed dose of 200 mg of pembrolizumab. We expect to report additional data evaluating initial durability and supporting selection of the recommended Phase 3 dose for the 1L combination in the second half of 2027.

Since our inception, we have focused substantially all of our resources on conducting research and development activities, undertaking preclinical studies and clinical trials, organizing and staffing our company, business planning, raising capital, establishing and maintaining our intellectual property portfolio and identifying potential product candidates. We do not have any products approved for sale and have not generated any revenue from product sales. We have incurred significant operating losses since our inception. We reported net losses of $68.6 million and $61.5 million for the nine months ended September 30, 2026 and 2025, respectively. As of September 30, 2026, we had an accumulated deficit of $511.8 million, net equity of $41.3 million, and cash, cash equivalents and marketable debt securities of $55.6 million. On October 1, 2026, we closed an underwritten public offering of common stock, pre-funded warrants and accompanying common warrants and received upfront gross proceeds of approximately $110.0 million, before deducting underwriting discounts and commissions and other offering expenses. We expect that our existing cash, cash equivalents and marketable debt securities, together with the net upfront proceeds from the public offering, will be sufficient to fund our operating expenses and capital expenditure requirements into the first half of 2028. We expect to continue to incur significant expenses and operating losses for the foreseeable future. We expect that our operating expenses and capital expenditures will increase substantially in connection with our ongoing activities. Our operations to date have been financed primarily through the sale of equity securities and additional funding will be necessary to fund future clinical and preclinical activities.

Components of Our Results of Operations

Revenues

To date, we have not generated any revenues from product sales and do not expect to generate any revenues from product sales in the foreseeable future. We record revenues from research and development agreements, including amounts related to upfront receipt for license fees, royalties, milestones and other contingent receipts and fees for research and development services.

Our ability to generate product revenues will depend upon our ability to successfully develop, obtain regulatory approval and commercialize our product candidate. Due to the numerous risks and uncertainties associated with product development and regulatory approval, we are unable to predict the amount, timing or whether we will be able to obtain product revenues.

Operating Expenses

Research and Development Expenses

Research and development expenses consist of costs incurred for our research activities, including our discovery efforts and research work to support clinical development, and the development of our programs. Research and development expenses are separated into program-specific costs and unallocated costs.

Program-specific costs include:

•
direct third party costs, which include expenses incurred under agreements with contract research organizations (CROs), and the cost of consultants who assist with the development of our product candidate on a program-specific basis, investigator grants, sponsored research, and any other third party expenses directly attributable to the development of the product candidates;
•
costs of acquiring, developing, manufacturing and testing clinical and preclinical materials, including costs incurred under agreements with contract development and manufacturing organizations (CDMOs) to the extent they can be allocated to a specific program;
•
license fees and milestone payments related to the acquisition and retention of certain licensed technology and intellectual property rights for a specific product candidate; and
•
costs associated with preclinical and clinical activities that are directly attributable to the development of the product candidates.

Unallocated costs include:

•
employee-related expenses for research and development personnel, including salaries, bonus, payroll taxes, related benefits, severance and other staff-related expenses;
•
stock-based compensation expenses for employees engaged in research and development activities;
•
facilities and other costs, which include allocated expenses for rent and maintenance of facilities, depreciation of leasehold improvements and equipment, laboratory supplies, third party cost for discovery research and the cost of consultants who assist with our research and development and costs related to contract manufacturing, but are not allocated to a specific program.

We expense research and development costs as incurred. Non-refundable advance payments that we make for goods or services to be received in the future for use in research and development activities are recorded as prepaid expenses. The prepaid amounts are expensed as the related goods are delivered or the services are performed, or when it is no longer expected that the goods will be delivered, or the services rendered.

We expect that our research and development expenses will increase substantially in connection with our ongoing and planned preclinical and clinical development activities related to our product candidate in the near term and in the future. The successful development of our product candidate is highly uncertain. At this time, we cannot accurately estimate or know the nature, timing and costs of the efforts that will be necessary to complete the preclinical and clinical development of our product candidate and we may never succeed in obtaining regulatory approval for our product candidate.

General and Administrative Expenses

General and administrative expenses consist primarily of salaries and personnel-related costs, including stock-based compensation, and severance for our personnel in executive, legal, finance and accounting, human resources and other administrative functions. General and administrative expenses also include professional fees for auditing, tax, and legal services, as well as insurance, board of director compensation, consulting, other administrative expenses and facility costs not otherwise included in research and development expenses.

Other Income, Net

Other income, net primarily consists of interest earned on our invested cash and cash equivalent balances, accretion of discounts associated with our marketable debt securities and sublease income under our former sublease, which ended in May 2026.

Results of Operations

Comparison of the Three Months Ended September 30, 2026 and 2025

The following table summarizes our results of operations for the three months ended September 30, 2026 and 2025 (in thousands):

Three Months Ended September 30,

2026

2025

Change

Operating expenses:

Research and development

$

16,556

$

17,808

$

(1,252

)

General and administrative

3,967

5,653

(1,686

)

Total operating expenses

20,523

23,461

(2,938

)

Loss from operations

(20,523

)

(23,461

)

2,938

Other income, net

Interest and investment income, net

539

774

(235

)

Sublease income

-

684

(684

)

Total other income, net

539

1,458

(919

)

Net loss

$

(19,984

)

$

(22,003

)

$

2,019

Research and Development Expenses

The following table summarizes our research and development expenses for the three months ended September 30, 2026 and 2025 (in thousands):

Three Months Ended September 30,

2026

2025

Change

Program-specific costs:

MICVO

$

9,633

$

10,343

$

(710

)

PYX-106

310

697

(387

)

Other program costs

111

269

(158

)

Total program costs

10,054

11,309

(1,255

)

Unallocated costs:

Personnel-related expenses including stock-based compensation

4,231

4,436

(205

)

Other costs

2,271

2,063

208

Total research and development expenses

$

16,556

$

17,808

$

(1,252

)

Research and development expenses decreased by $1.3 million, from $17.8 million for the three months ended September 30, 2025 to $16.6 million for the three months ended September 30, 2026.

MICVO program-specific research and development costs decreased by $0.7 million, primarily due to a reduction of $3.6 million in manufacturing costs, partially offset by a $3.0 million increase in clinical trial-related expenses due to an increased number of patients dosed in the MICVO monotherapy and combination therapy trials.

PYX-106 program-specific research and development costs decreased by $0.4 million, reflecting lower program-related expenses following the pause in clinical development of PYX-106-101 in December 2024 and the termination of our license agreement with Biosion USA, Inc., effective August 2026.

Unallocated research and development costs remained flat year over year.

General and Administrative Expenses

The following table summarizes our general and administrative expenses for the three months ended September 30, 2026 and 2025 (in thousands):

Three Months Ended September 30,

2026

2025

Change

Personnel-related expenses including stock-based compensation

$

2,499

$

3,894

$

(1,395

)

Professional and consultant fees

639

713

(74

)

Facilities, insurance and other costs

829

1,046

(217

)

Total general and administrative expenses

$

3,967

$

5,653

$

(1,686

)

General and administrative expenses decreased by $1.7 million, from $5.7 million for the three months ended September 30, 2025 to $4.0 million for the three months ended September 30, 2026. This decrease was primarily attributable to lower stock-based compensation expense of $1.4 million.

Other Income, Net

Other income, net for the three months ended September 30, 2026 and 2025 was $0.5 million and $1.5 million, respectively. The decrease of $0.9 million was due to lower interest and investment income and the absence of sublease income following the end of the sublease term in May 2026.

Comparison of the Nine Months Ended September 30, 2026 and 2025

The following table summarizes our results of operations for the nine months ended September 30, 2026 and 2025 (in thousands):

Nine Months Ended September 30,

2026

2025

Change

Milestone revenue

$

-

$

2,820

$

(2,820

)

Operating expenses:

Research and development

52,596

51,985

611

General and administrative

18,277

16,960

1,317

Total operating expenses

70,873

68,945

1,928

Loss from operations

(70,873

)

(66,125

)

(4,748

)

Other income, net

Interest and investment income, net

1,251

3,010

(1,759

)

Sublease income

1,020

1,883

(863

)

Total other income, net

2,271

4,893

(2,622

)

Loss before income taxes

(68,602

)

(61,232

)

(7,370

)

Income tax expense

-

283

(283

)

Net loss

$

(68,602

)

$

(61,515

)

$

(7,087

)

Milestone Revenue

We recognized no revenue for the nine months ended September 30, 2026, compared to $2.8 million for the nine months ended September 30, 2025. The prior-year revenue related to a regulatory milestone achieved under the Simcere out-licensing and collaboration agreement.

Research and Development Expenses

The following table summarizes our research and development expenses for the nine months ended September 30, 2026 and 2025 (in thousands):

Nine Months Ended September 30,

2026

2025

Change

Program-specific costs:

MICVO

$

31,772

$

27,114

$

4,658

PYX-106

1,148

2,221

(1,073

)

Other program costs

573

1,086

(513

)

Total program costs

33,493

30,421

3,072

Unallocated costs:

Personnel-related expenses including stock-based compensation

13,568

14,356

(788

)

Other costs

5,535

7,208

(1,673

)

Total research and development expenses

$

52,596

$

51,985

$

611

Research and Development Expenses

Research and development expenses increased by $0.6 million, from $52.0 million for the nine months ended September 30, 2025 to $52.6 million for the nine months ended September 30, 2026.

MICVO program-specific research and development costs increased by $4.7 million, primarily due to a $10.8 million increase in clinical trial-related expenses due to an increased number of patients dosed in the MICVO monotherapy and combination therapy trials, as well as a $2.1 million increase in research and preclinical studies, partially offset by a reduction in manufacturing expense of $7.9 million.

PYX-106 program-specific research and development costs decreased by $1.1 million, reflecting lower program-related expenses following the pause in clinical development of PYX-106-101 in December 2024 and the termination of our license agreement with Biosion USA, Inc., effective August 2026.

Unallocated research and development costs decreased by $2.5 million primarily due to decreased stock-based compensation expense of $1.2 million, decreased employee recruitment costs of $0.7 million and lower depreciation and amortization expense of $0.5 million.

General and Administrative Expenses

The following table summarizes our general and administrative expenses for the nine months ended September 30, 2026 and 2025 (in thousands):

Nine Months Ended September 30,

2026

2025

Change

Personnel-related expenses including stock-based compensation

$

12,607

$

11,400

$

1,207

Professional and consultant fees

2,667

2,390

277

Facilities, insurance and other costs

3,003

3,170

(167

)

Total general and administrative expenses

$

18,277

$

16,960

$

1,317

General and administrative expenses increased by $1.3 million, from $17.0 million for the nine months ended September 30, 2025 to $18.3 million for the nine months ended September 30, 2026. This increase was primarily attributable to a $1.2 million increase in personnel-related expenses, primarily due to an increase in severance costs of $0.7 million, and a $0.3 million increase in professional and consultant fees.

Other Income, Net

Other income, net for the nine months ended September 30, 2026 and 2025 was $2.3 million and $4.9 million, respectively. The decrease of $2.6 million was primarily due to lower interest and investment income and lower sublease income, following the end of the sublease term in May 2026.

Liquidity and Capital Resources

We had cash, cash equivalents and marketable debt securities of $55.6 million as of September 30, 2026. For the three months ended September 30, 2026 and 2025, we had net losses of $20.0 million and $22.0 million, respectively. For the nine months ended September 30, 2026 and 2025, we had net losses of $68.6 million and $61.5 million, respectively. As of September 30, 2026, we had an accumulated deficit of $511.8 million and net equity of $41.3 million.

On November 26, 2025, we filed a registration statement on Form S-3 with the SEC for the issuance of common stock, preferred stock, warrants, debt securities, rights and units with an aggregate offering price of up to $350.0 million. On December 9, 2025, the registration statement was declared effective by the SEC. The registration statement included an at-the-market ("ATM") offering program for the sale of up to $150.0 million of shares of our common stock. During the nine months ended September 30, 2026, we did not sell any shares under the ATM program, and on September 29, 2026, we terminated the ATM program.

On July 2, 2026, we completed a private placement (the "Private Placement") with certain institutional accredited investors (the "Purchasers") and issued and sold to the Purchasers an aggregate of (i) 19,600,153 shares of common stock at a purchase price of $2.551 per share, and (ii) common warrants (the "July 2026 Warrants") to purchase up to an equal number of shares of common stock at an exercise price of $3.289 per share. The July 2026 Warrants became exercisable on September 9, 2026, the date on which we first publicly disclosed clinical data from our MICVO Phase 1 monotherapy study in 2L+ R/M HNSCC, and will expire on July 2, 2029. We received gross proceeds from the Private Placement of approximately $50.0 million, before deducting placement agent fees and offering expenses, and net proceeds of $48.3 million after deducting such fees and expenses.

On October 1, 2026, we completed an underwritten public offering (the "Public Offering") of (i) 36,047,919 shares of our common stock and (ii) pre-funded warrants to purchase 1,883,121 shares of our common stock, in each case together with accompanying common warrants to purchase an aggregate of 49,310,352 shares of common stock (the "October 2026 Warrants"). The combined public offering price was $2.90 per share of common stock and accompanying October 2026 Warrants and $2.899 per pre-funded warrant and accompanying October 2026 Warrants. The pre-funded warrants have an exercise price of $0.001 per share. The October 2026 Warrants have an exercise price of $3.50 per share, will become exercisable only following stockholder approval of, and the effectiveness of, an amendment to our certificate of incorporation to increase the number of authorized shares of common stock, and will expire on the earlier of (i) the fifth anniversary of the effective date of such amendment and (ii) the 30th calendar day following the later of such effective date and the public release of overall survival data from our MICVO Phase 1 monotherapy study in second line and beyond recurrent / metastatic HNSCC. We do not currently have sufficient authorized shares of common stock to permit the exercise of the October 2026 Warrants. On October 21, 2026, we filed a definitive proxy statement for a special meeting of stockholders to be held on November 13, 2026, at which stockholders will vote on an amendment to increase the number of authorized shares of common stock from 190,000,000 to 380,000,000.

We received gross proceeds of approximately $110.0 million, before deducting underwriting discounts and commissions and offering expenses. These amounts exclude any proceeds we may receive from the October 2026 Warrants or the pre-funded warrants. We may receive up to approximately $172.6 million of additional gross proceeds if all of the October 2026 Warrants and pre-funded warrants are exercised in full for cash. See Note 14, Subsequent Events, to our unaudited condensed consolidated financial statements included in Part I, Item 1 of this Quarterly Report on Form 10-Q.

We expect our expenses to increase substantially in connection with our ongoing activities, particularly as we advance further clinical trials for MICVO. The timing and amount of our funding requirements will depend on many factors, including:

•
the cost associated with ongoing monotherapy and combination therapy clinical trials for MICVO;
•
the cost associated with our planned Phase 3 HeadlinerSM trial;
•
the manufacture of drug products and drug substance for MICVO;
•
the timing and progress of our other preclinical and clinical development activities;
•
the progress of the development efforts of parties with whom we have entered, or may in the future enter into, in-licensing, collaborations and research and development agreements;
•
the costs and timing of future commercialization activities, including product manufacturing, marketing, sales and distribution, for our product candidate for which we receive marketing licensure;
•
our ability to maintain our current licenses and research and development programs and to establish new collaboration arrangements;
•
the costs involved in prosecuting, maintaining and enforcing patent and other intellectual property rights;
•
the cost and timing of regulatory licenses; and
•
insurance, legal and other regulatory compliance expenses to operate as a public company.

Until such time, if ever, we can generate substantial product revenues, we expect to continue to finance our operations through a combination of equity offerings, debt financings, collaborations, strategic alliances and marketing, distribution or licensing arrangements. To the extent that we raise additional capital through the sale of equity or convertible debt securities, your ownership interest will be diluted, and the terms of these securities may include liquidation or other preferences that adversely affect your rights as a common stockholder. Debt financing and preferred equity financing, if available, may involve agreements that include covenants limiting or restricting our ability to take specific actions, such as incurring additional debt, making acquisitions, engaging in acquisition, merger or collaboration transactions, selling or licensing our assets, making capital expenditures, redeeming our stock, making certain investments or declaring dividends.

If we raise additional funds through collaborations, strategic alliances or marketing, distribution or licensing arrangements with third parties, we may have to relinquish valuable rights to our technologies, future revenue streams, research programs or product candidate, or grant licenses on terms that may not be favorable to us. If we are unable to raise additional funds through equity or debt financings when needed, we may be required to delay, limit, reduce or terminate our product development or future commercialization efforts or grant rights to develop and market our product candidate that we would otherwise prefer to develop and market ourselves.

Cash Flows

The following table provides information regarding our cash flows for the periods presented (in thousands):

Nine Months Ended September 30,

2026

2025

Net cash used in operating activities

$

(60,500

)

$

(53,075

)

Net cash provided by investing activities

380

42,596

Net cash provided by (used in) financing activities

48,554

(75

)

Net decrease in cash, cash equivalents and restricted cash

$

(11,566

)

$

(10,554

)

Operating Activities

During the nine months ended September 30, 2026, net cash used in operating activities was $60.5 million, which consisted of our net loss of $68.6 million and a net change in our operating assets and liabilities of $1.0 million, partially offset by non-cash charges of $9.1 million. The non-cash charges of $9.1 million were primarily due to $8.1 million of stock-based compensation, $1.1 million of depreciation and amortization expense and $0.7 million of non-cash operating lease expense, partially offset by $0.8 million related to accretion of discounts on marketable debt securities. The net change in our operating assets and liabilities was primarily due to a decrease in accounts payable of $2.8 million related to the timing of vendor payments, and a reduction in operating lease liabilities of $1.3 million, partially offset by a decrease in prepaid expenses and other current assets of $1.7 million and an increase in accrued expenses and other current liabilities of $1.4 million.

During the nine months ended September 30, 2025, net cash used in operating activities was $53.1 million, which consisted of our net loss of $61.5 million and a net change in our operating assets and liabilities of $0.9 million, partially offset by non-cash charges of $9.4 million. The non-cash charges of $9.4 million were primarily due to $9.7 million of stock-based compensation, $1.6 million of depreciation and amortization expense and $0.6 million of non-cash operating lease expense, offset by $2.6 million related to accretion of discounts on marketable debt securities. The net change in our operating assets and liabilities was primarily due to a decrease in accrued expenses and other current liabilities of $3.4 million, an increase in prepaid expenses and other current assets of $1.3 million and a reduction in operating lease liabilities of $1.1 million, partially offset by an increase in accounts payable of $4.9 million, primarily related to the timing of vendor payments and services performed related to our ongoing clinical trials.

Investing Activities

During the nine months ended September 30, 2026, net cash provided by investing activities was $0.4 million, which consisted of redemptions of marketable debt securities of $63.7 million, partially offset by purchases of marketable debt securities of $63.4 million.

During the nine months ended September 30, 2025, net cash provided by investing activities was $42.6 million, which consisted of redemptions of marketable debt securities of $149.6 million, partially offset by purchases of marketable debt securities of $107.0 million.

Financing Activities

During the nine months ended September 30, 2026, net cash provided by financing activities was $48.6 million, which consisted primarily of net proceeds from the Private Placement of $48.3 million and proceeds from the exercise of stock options of $0.3 million, partially offset by tax withholding payments related to net settlement of restricted common stock of $0.1 million.

During the nine months ended September 30, 2025, net cash used in financing activities was $0.1 million, which consisted primarily of tax withholding payments related to the net settlement of restricted common stock.

Outlook

As of September 30, 2026, we had approximately $57.0 million in cash, cash equivalents, restricted cash and marketable debt securities. Additionally, on October 1, 2026, we completed the Public Offering which resulted in gross proceeds of approximately $110.0 million, before deducting underwriting discounts and commissions and offering expenses, and we may receive up to approximately $172.6 million of additional gross proceeds if all of the October 2026 Warrants and pre-funded warrants are exercised in full for cash. Our cash, cash equivalents, restricted cash and marketable debt securities as of September 30, 2026, together with the net proceeds from the Public Offering, will be sufficient to fund our operating expenses and capital expenditure requirements into the first half of 2028. However, we have based this estimate on assumptions that may prove to be incorrect, and our operating plan may change as a result of many factors currently unknown to us. In addition, we may utilize our available capital resources sooner than we expect.

If the October 2026 Warrants are not exercised, these funds will not be sufficient to fully fund our planned global pivotal Phase 3 HeadlinerSM trial and we will need to raise additional capital to fund our operations beyond the first half of 2028 and to complete the development of MICVO, which we may seek through public or private equity or debt financings, collaboration agreements or a combination of these.

Contractual Obligations and Commitments

Operating lease obligation

We lease an office and laboratory space in Boston, Massachusetts with lease payments that continue through December 31, 2032, and have scheduled rent increases each year of 3%. The remaining contractual fixed lease payments over the term of the lease aggregate to $23.3 million. The operating lease obligation is discussed in Note 10, Operating Leases to our unaudited condensed consolidated financial statements included in Part I, Item 1 of this Quarterly Report on Form 10-Q for further information.

Other obligations

We enter into licensing and related agreements in the normal course of business. In accordance with these agreements, we are obligated to pay, among other items, future contingent payments, royalties, and sublicensing revenues in the future, as applicable. We have not included potential future payments due under these licensing and collaboration agreements in contractual obligations because the payment obligations under the agreements are contingent upon future events. Refer to Note 6, Licensing Agreements, to our unaudited condensed consolidated financial statements included in Part I, Item 1 of this Quarterly Report on Form 10-Q for further information.

In addition, we enter into contracts in the normal course of business with CDMOs, CROs, and other third parties for preclinical work and clinical development related work. These contracts do not contain minimum purchase commitments and are cancelable by us upon prior written notice. Payments due upon cancellation consist only of payments for services provided or expenses incurred, including non-cancelable obligations of our service providers, up to the date of cancellation. These payments are not included in the contractual obligations above as the amount and timing of such payments are not known.

Off-Balance Sheet Arrangements

We did not have during the periods presented, and we do not currently have, any off-balance sheet arrangements, as defined in the rules and regulations of the Securities and Exchange Commission.

Critical Accounting Policies and Significant Judgments and Estimates

Our unaudited condensed consolidated financial statements are prepared in accordance with generally accepted accounting principles in the United States. The preparation of our unaudited condensed consolidated financial statements and related disclosures requires us to make estimates and judgments that affect the reported amounts of assets, liabilities, costs and expenses, and the disclosure of contingent assets and liabilities in our unaudited condensed consolidated financial statements. We base our estimates on historical experience, known trends and events, and various other factors that we believe are reasonable under the circumstances, the results of which form the basis for making judgments about the carrying values of assets and liabilities that are not readily apparent from other sources. We evaluate our estimates and assumptions on an ongoing basis. Our actual results may differ from these estimates under different assumptions or conditions.

There have been no significant changes to our critical accounting policies and estimates as compared to those described in "Note 2 - Basis of Presentation and Summary of Significant Accounting Policies" to our audited consolidated financial statements set forth in our Fiscal 2025 10-K.

Recent Accounting Pronouncements

For information with respect to recently issued accounting standards and the impact of these standards on our unaudited condensed consolidated financial statements, refer to Note 2, Basis of Presentation and Summary of Significant Accounting Policies to our unaudited condensed consolidated financial statements included in Part I, Item 1 of this Quarterly Report on Form 10-Q.

Jumpstart Our Business Startups Act

We are an "emerging growth company," as defined in the Jumpstart Our Business Startups Act of 2012, or the JOBS Act. We are also a "smaller reporting company," meaning that the market value of our shares held by non-affiliates is less than $700 million and our annual revenues were less than $100 million during the most recently completed fiscal year. We may rely on exemptions from certain disclosure requirements that are available to smaller reporting companies. Specifically, as a smaller reporting company, we may choose to present only the two most recent fiscal years of audited financial statements in our Annual Report on Form 10-K and have reduced disclosure obligations regarding executive compensation, and, similar to emerging growth companies, if we are a smaller reporting company with less than $100 million in annual revenues, we would not be required to obtain an attestation report on internal control over financial reporting issued by our independent registered public accounting firm.

Pyxis Oncology Inc. published this content on November 05, 2026, and is solely responsible for the information contained herein. Distributed via EDGAR on November 05, 2026 at 12:47 UTC. If you believe the information included in the content is inaccurate or outdated and requires editing or removal, please contact us at [email protected]